- comment: The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO ("bfo_classes_only.owl") includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl ("bfo.owl"). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl. If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies. See the BFO 2 release notes for further information about BFO 2. Please note that the current release of bfo.owl uses temporal relations when the subject or object is a continuant, a major change from BFO 1.
- comment: This is an early version of BFO version 2 and has not yet been extensively reviewed by the project team members. Please see the project site http://code.google.com/p/bfo/ , the bfo2 owl discussion group http://groups.google.com/group/bfo-owl-devel , the bfo2 discussion group http://groups.google.com/group/bfo-devel, the tracking google doc http://goo.gl/IlrEE, and the current version of the bfo2 reference http://purl.obolibrary.org/obo/bfo/dev/bfo2-reference.docx . This ontology is generated from a specification at http://bfo.googlecode.com/svn/trunk/src/ontology/owl-group/specification/ and with the code that generates the OWL version in http://bfo.googlecode.com/svn/trunk/src/tools/. A very early version of BFO version 2 in CLIF is at http://purl.obolibrary.org/obo/bfo/dev/bfo.clif
- contributor: Alan Ruttenberg, Albert Goldfain, Barry Smith, Bill Duncan, Bjoern Peters, Chris Mungall, David Osumi-Sutherland, Fabian Neuhaus, James A. Overton, Janna Hastings, Jie Zheng, Jonathan Bona, Larry Hunter, Leonard Jacuzzo, Ludger Jansen, Mark Ressler, Mathias Brochhausen, Mauricio Almeida, Melanie Courtot, Pierre Grenon, Randall Dipert, Robert Rovetto, Ron Rudnicki, Stefan Schulz, Thomas Bittner, Werner Ceusters, Yongqun "Oliver" He, Chris mungall, Erica Marcos, Ningxian Fan, Ryan R. Brinkman, Shunzhou Deng
- creator: Barry Smith, Bjoern Peters, Jie Zheng, Melanie Courtot, Lindsay Cowell, Yongqun "Oliver" He (YH), Rebecca Racz, Adrien Barton, Alan Ruttenburg, Alexander D. Diehl, Huan Li, Jean-François Ethier, Marcy Harris, Ningxian Fan, Omar Tibi, Qingzhi Liu, Richard H. Scheuermann, Ronak Sutariya, Samantha G. Sayers (SGS), Thomas Todd, Yongqun "Oliver" He, Yu Lin, Yu Lin (YL), Zuoshuang "Allen" Xiang
- date: May 26, 2017
- editor note: BFO 2 Reference: BFO does not claim to be a complete coverage of all entities. It seeks only to provide coverage of those entities studied by empirical science together with those entities which affect or are involved in human activities such as data processing and planning 8211; coverage that is sufficiently broad to provide assistance to those engaged in building domain ontologies for purposes of data annotation [17
- editor note: BFO 2 Reference: For both terms and relational expressions in BFO, we distinguish between primitive and defined. 8216;Entity8217; is an example of one such primitive term. Primitive terms in a highest-level ontology such as BFO are terms that are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms.
- editor note: BFO 2 Reference: BFO8217;s treatment of continuants and occurrents 8211; as also its treatment of regions, rests on a dichotomy between space and time, and on the view that there are two perspectives on reality 8211; earlier called the 8216;SNAP8217; and 8216;SPAN8217; perspectives, both of which are essential to the non-reductionist representation of reality as we understand it from the best available science [30
- format: OWL-DL
- subject: An ontology in the domain of vaccine and vaccination
- title: Vaccine Ontology
- versionInfo: 95
- versionInfo: Vision Release; 1.0.788
- Description: The Vaccine Ontology (VO) is a biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine annotation, integrate various vaccine data, and support computer-assisted reasoning. VO supports basic vaccine R&D and clincal vaccine usage. VO is initiated and primarily developed by Dr. Yongqun "Oliver" He at the University of Michigan Medical School. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities.; OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012.
- defaultLanguage: en
- homepage: http://ifomis.org/bfo; http://code.google.com/p/bfo/
- imports: http://purl.obolibrary.org/obo/bfo.owl
- isDefinedBy: http://bfo.googlecode.com/svn/trunk/src/ontology/owl-group/specification/; http://purl.obolibrary.org/obo/bfo/2012-07-20/Reference; http://purl.obolibrary.org/obo/bfo/2014-05-03/ReleaseNotes; http://purl.obolibrary.org/obo/bfo/dev/bfo.clif
- license: http://creativecommons.org/licenses/by/3.0/
- mbox: email@example.com
- seeAlso: http://groups.google.com/group/bfo-discuss; http://bfo.googlecode.com/svn/trunk/src/tools/; http://groups.google.com/group/bfo-devel; http://groups.google.com/group/bfo-owl-devel; http://purl.obolibrary.org/obo/bfo/dev/owl
Number of Terms (including imported terms) (Detailed Statistics)
Top level terms and selected core terms
Number of SPARQL queries:8